School of Biology current student

Information for current students at the School of Biology

Biology Online Module Handbook

BL4295 Applications of Mass Spectrometry

(BL4295 online module handbook version )

cover image
Mass spectrometry is becoming an ubiquitous technique in most areas of science. Specifically in biological sciences, mass spectrometry is more accessible and used more than ever, from quantification of metabolites and discovery of new natural prodcuts, to the quantitative “omics” and imaging that provides unique signatures to cells and tissues. We will cover principles of mass spectrometry for small molecule quantification, its usage in metabolomics, lipidomics, peptidomics/proteomics and mass spectrometry imaging. We will work on problem solving workshops to analyse data, and will engage with researchers and scientists employing mass spectrometry as an integral part of their work. The students will design an experiment using mass spectrometry and present on how this will solve a problem in an area of their choosing.*

Credits: 15*

Semester: 2

Module Organiser
Dr Clarissa Czekster
cmc27@st-andrews.ac.uk
01334463792
Pre-requisite Modules:
Before taking this module you must pass BL3324*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:


Biology Teaching Office:
Level 2, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk      Phone: +44 (0)1334 46 3602 or 3566

BL4295: Timetable

Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 2: Week 1

DATE & TIMEVENUESTAFFEVENT
Tuesday
16-01-2024
13:00 to 15:00
Medical and Biological Sciences Building
Tutorial room 5
Dr Clarissa Czekster
Dr David J Hughes
Dr Simon Young
Other O1: Introduction to module €" David Hughes (15min), Simon (15 mins) Clarissa Czekster (30 mins) Visit to mass spec lab (1h) Clarissa Czekster
2023-4_BL4295_O1

Semester 2: Week 2

DATE & TIMEVENUESTAFFEVENT
Tuesday
23-01-2024
13:00 to 15:00
Medical and Biological Sciences Building
Tutorial room 5
Dr Clarissa Czekster
Dr David J Hughes
Dr Simon Young
Lecture L1: Introduction to small molecule mass spectrometry and quantification
2023-4_BL4295_L1
Thursday
25-01-2024
13:00 to 15:00
Medical and Biological Sciences Building
Tutorial room 5
Dr Clarissa Czekster
-
Workshop W1: Mass spectrometry for small molecule quantification - data analysis
2023-4_BL4295_W1

Semester 2: Week 3

DATE & TIMEVENUESTAFFEVENT
Monday
29-01-2024
13:00 to 15:00
Biomedical Sciences Building
seminar room
Dr Clarissa Czekster
-
Other O2: External Speaker €" Prof Jeffrey Huang (University of Dundee)
2023-4_BL4295_O2

Semester 2: Week 4

DATE & TIMEVENUESTAFFEVENT
Tuesday
06-02-2024
13:00 to 15:00
Medical and Biological Sciences Building
Tutorial room 5
Dr Simon Young
-
Lecture L2: Lipidomics and metabolomics
2023-4_BL4295_L2
Thursday
08-02-2024
13:00 to 15:00
Medical and Biological Sciences Building
Tutorial room 5
Dr Simon Young
-
Workshop W2: Metabolomics /Lipidomics data analysis
2023-4_BL4295_W2

Semester 2: Week 5

DATE & TIMEVENUESTAFFEVENT
Tuesday
13-02-2024
13:00 to 15:00
Biomedical Sciences Building
Dr Simon Young
-
Tutorial T1: metabolomics/lipidomics
2023-4_BL4295_T1

Semester 2: Week 6

DATE & TIMEVENUESTAFFEVENT
Tuesday
20-02-2024
13:00 to 15:00
Medical and Biological Sciences Building
Tutorial room 5
Dr David J Hughes
-
Lecture L3: Applications of proteomics
2023-4_BL4295_L3
Wednesday
21-02-2024
13:00 to 15:00
Biomedical Sciences Building
Seminar room
Dr David J Hughes
-
Other O3: External speaker €" Prof Ed Emmott (Liverpool University)
2023-4_BL4295_O3

Spring Break: 26-Feb-2024 to 01-Mar-2024

Semester 2: Week 7

DATE & TIMEVENUESTAFFEVENT
Tuesday
05-03-2024
13:00 to 15:00
Medical and Biological Sciences Building
Tutorial room 5 - TBC
Dr Clarissa Czekster
Dr David J Hughes
Dr Simon Young
Tutorial T2: devise a novel research project €" project sign up
2023-4_BL4295_T2

Semester 2: Week 8

DATE & TIMEVENUESTAFFEVENT
Tuesday
12-03-2024
13:00 to 15:00
Medical and Biological Sciences Building
tutorial room 5 - TBC
Dr Clarissa Czekster
say
Dr David J Hughes
Workshop W3: Preparation for presentations
2023-4_BL4295_W3

Semester 2: Week 9

DATE & TIMEVENUESTAFFEVENT
Tuesday
19-03-2024
13:00 to 16:00
Medical and Biological Sciences Building
Tutorial room 5
Dr Clarissa Czekster
Dr David J Hughes
Other O4: Presentations
2023-4_BL4295_O4
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL4295: Assessment

Coursework 100%*

The following related information applies to all Biology modules:

School of Biology Marking Criteria: See JH booklet info (st-andrews.ac.uk) 
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the Biology Teaching Office, Level 2, BMS Building, North Haugh.
Exam details: See School of Biology UG Handbook JH booklet info (st-andrews.ac.uk)  : All Biology exams will be conducted online for 2022-23.
Exam timetable: See Timetables - Exams - University of St Andrews (st-andrews.ac.uk) 
Expected attendance: See JH booklet info (st-andrews.ac.uk)  for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See JH booklet info (st-andrews.ac.uk)
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: JH booklet info (st-andrews.ac.uk)
University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Before contacting staff, students should check the content of the Biology Undergraduate Handbook, the module handbook and specific task instructions.

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Dr Clarissa Czekster cmc27@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Dr Clarissa Czekster cmc27@st-andrews.ac.uk)
Marking on exams Module Organiser (Dr Clarissa Czekster cmc27@st-andrews.ac.uk)
Rearranging practical days
Module Organiser (Dr Clarissa Czekster cmc27@st-andrews.ac.uk)
Absence and/or extensions Module Organiser (Dr Clarissa Czekster cmc27@st-andrews.ac.uk)

and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology UG Handbook for list:
JH booklet info (st-andrews.ac.uk)

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator ( biodisabilities@st-andrews.ac.uk )

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office (Level 2), University of St Andrews, Biomolecular Sciences Building, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk

Tel: 01334 46 3602 or 3566

BL4295: Contributing Staff

Dr Clarissa Czekster
(Module Organiser)

Wellcome Trust Sir Henry Dale Fellow and Lecturercmc27@st-andrews.ac.uk
Dr Clarissa Czekster
(Module Organiser)
Wellcome Trust Sir Henry Dale Fellow and Lecturercmc27@st-andrews.ac.uk
Dr David J HughesLecturerdjh25@st-andrews.ac.uk
Dr Simon YoungAssociate Lecturer (Education focused)say2@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL4295: Learning Outcomes

No details are currently available for Learning Outcomes

Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL4295: Acquired Skills

No details are currently available for Acquired Skills

Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Policies

(Information in this section applies to all Biology Modules)

  • The procedures and regulations followed by the School of Biology are outlined in the University Handbook and in the School of Biology UG handbook  JH booklet info (st-andrews.ac.uk) 
  • All coursework associated with the module must be completed and submitted by its due date.
  • Specific School regulations relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, Good Academic Practice and Academic Alert are stated in the School of Biology UG hand book JH booklet info (st-andrews.ac.uk)  and students are required to carefully read these regulations.
  • Students are also referred to the University Handbook, available at: http://www.st-andrews.ac.uk/studenthandbook/