School of Biology current student

Information for current students at the School of Biology

Biology Online Module Handbook

BL4215 Bacterial Virulence Factors

(BL4215 online module handbook version 34)

cover image

image: Fibronectin-mediated Streptococcus pyogenes invasion of a host cell.

In order to establish an infection in a host, pathogenic bacteria rely on mechanisms to adhere to host tissue, gain entry into cells, escape the host's immune response and spread and survive within or on the host. These processes are mediated by bacterial virulence factors, i.e. proteins and other bacterial products that utilise and subvert diverse host cellular processes for the benefit of the pathogen. In this module students will explore how structural biology has led to significant breakthroughs in understanding the molecular bases of some important bacterial infections.*

Credits: 15*

Semester: 1

Module Organiser
Dr Uli Schwarz-Linek
us6@st-andrews.ac.uk
01334 467188
Pre-requisite Modules:
Before taking this module you must pass BL3301*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:


Biology Teaching Office:
Level 2, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk      Phone: +44 (0)1334 46 3602 or 3566

BL4215: Timetable

Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 1: Week 1

DATE & TIMEVENUESTAFFEVENT
Monday
11-09-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L1: Module introduction
2023-4_BL4215_L1

Semester 1: Week 2

DATE & TIMEVENUESTAFFEVENT
Monday
18-09-2023
16:00 to 17:00
Biomedical Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L2: Why study virulence factors?
2023-4_BL4215_L2

Semester 1: Week 3

DATE & TIMEVENUESTAFFEVENT
Monday
25-09-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L3: Bacterial secretion systems
2023-4_BL4215_L3

Semester 1: Week 4

DATE & TIMEVENUESTAFFEVENT
Monday
02-10-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L4: Phagocytosis and invasion I
2023-4_BL4215_L4
Thursday
05-10-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L5: Phagocytosis and invasion II
2023-4_BL4215_L5

Semester 1: Week 5

DATE & TIMEVENUESTAFFEVENT
Monday
09-10-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L6: Pili I
2023-4_BL4215_L6
Thursday
12-10-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L7: Pili II
2023-4_BL4215_L7

Semester 1: Week 7

DATE & TIMEVENUESTAFFEVENT
Monday
23-10-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Lecture L8: TIE proteins: chemical harpoons
2023-4_BL4215_L8
Thursday
26-10-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Tutorial T1: Twitter threads and blogs
2023-4_BL4215_T1

Semester 1: Week 8

DATE & TIMEVENUESTAFFEVENT
Thursday
02-11-2023
16:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Other O1: reserve time slot
2023-4_BL4215_O1

Semester 1: Week 10

DATE & TIMEVENUESTAFFEVENT
Monday
13-11-2023
14:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Other O2: Student presentations I
2023-4_BL4215_O2
Wednesday
15-11-2023
14:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Other O3: Student presentations II
2023-4_BL4215_O3
Thursday
16-11-2023
14:00 to 17:00
Biomolecular Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Other O4: Student presentations III
2023-4_BL4215_O4
Friday
17-11-2023
14:00 to 17:00
Biomedical Sciences Building
Lecture Theatre
Dr Uli Schwarz-Linek
-
Other O5: Student presentations IV
2023-4_BL4215_O5
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL4215: Assessment

Coursework = 100%*

The following related information applies to all Biology modules:

School of Biology Marking Criteria: See JH booklet info (st-andrews.ac.uk) 
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the Biology Teaching Office, Level 2, BMS Building, North Haugh.
Exam details: See School of Biology UG Handbook JH booklet info (st-andrews.ac.uk)  : All Biology exams will be conducted online for 2022-23.
Exam timetable: See Timetables - Exams - University of St Andrews (st-andrews.ac.uk) 
Expected attendance: See JH booklet info (st-andrews.ac.uk)  for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See JH booklet info (st-andrews.ac.uk)
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: JH booklet info (st-andrews.ac.uk)
University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Before contacting staff, students should check the content of the Biology Undergraduate Handbook, the module handbook and specific task instructions.

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Dr Uli Schwarz-Linek us6@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Dr Uli Schwarz-Linek us6@st-andrews.ac.uk)
Marking on exams Module Organiser (Dr Uli Schwarz-Linek us6@st-andrews.ac.uk)
Rearranging practical days
Module Organiser (Dr Uli Schwarz-Linek us6@st-andrews.ac.uk)
Absence and/or extensions Module Organiser (Dr Uli Schwarz-Linek us6@st-andrews.ac.uk)

and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology UG Handbook for list:
JH booklet info (st-andrews.ac.uk)

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator ( biodisabilities@st-andrews.ac.uk )

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office (Level 2), University of St Andrews, Biomolecular Sciences Building, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk

Tel: 01334 46 3602 or 3566

BL4215: Contributing Staff

Dr Uli Schwarz-Linek
(Module Organiser)

Senior Lecturerus6@st-andrews.ac.uk
Dr Uli Schwarz-Linek
(Module Organiser)
Senior Lecturerus6@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL4215: Learning Outcomes

This module is an introduction to the molecular basis of bacterial virulence. It aims to impart an appreciation of the role of molecular and structural biology in infectious disease research.


Students completing module BL4215 successfully should be able to:

  • Definition and classes of bacterial virulence factors
  • Appreciate the role of structural biology in understanding bacterial pathogenicity
  • Understand the function and mechanisms of Gram-negative secretion systems
  • Learn how bacterial surface-associated proteins trigger or prevent phagocytosis
  • Gain insights into the latest findings regarding structure and function of bacterial pili and adhesins
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL4215: Acquired Skills

Practical Skills

    Transferable Skills

    • Long individual presentation on given topic (>15 min)
    • Long essay (>2000 words)
    • Science journalism piece aimed at general audience
    • Finding literature
    • Referencing
    • Searching databases
    • Peer assessment
    Data Sources: information in this online module handbook is gathered from several sources.
    Small footnote marks beside content, or by section titles indicate the source.
    * University of St Andrews Module Catalogue
    School of Biology Symbiosis Database (module organisers only)
    University of St Andrews MMS (St Andrews users only)

    Policies

    (Information in this section applies to all Biology Modules)

    • The procedures and regulations followed by the School of Biology are outlined in the University Handbook and in the School of Biology UG handbook  JH booklet info (st-andrews.ac.uk) 
    • All coursework associated with the module must be completed and submitted by its due date.
    • Specific School regulations relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, Good Academic Practice and Academic Alert are stated in the School of Biology UG hand book JH booklet info (st-andrews.ac.uk)  and students are required to carefully read these regulations.
    • Students are also referred to the University Handbook, available at: http://www.st-andrews.ac.uk/studenthandbook/