School of Biology current student

Information for current students at the School of Biology

Biology Online Module Handbook

BL3302 Gene Regulation

(BL3302 online module handbook version 97)

cover image
This module builds on material covered in BL2302 Molecular Biology. It first considers the structure of genes and the composition of genomes and then examines genetic activity in eukaryotes in relation to nuclear organisation, chromatin structure and epigenetic mechanisms. Regulation of expression at the levels of gene transcription, RNA processing, RNA stability and translation are next covered in detail, drawing particular attention to the nature of protein-nucleic acid interactions. Specific control mechanisms in different prokaryotic and eukaryotic systems, induced by environmental, cell cycle, and metabolic signals are highlighted.*

Credits: 20*

Semester: 1

Module Organiser
Dr Stuart MacNeill
sam31@st-andrews.ac.uk
01334 467268
Pre-requisite Modules:
Before taking this module you must pass BL2302 and ( pass BL2306 or pass BL2309 )*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:


Biology Teaching Office:
Level 2, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk      Phone: +44 (0)1334 46 3602 or 3566

BL3302: Timetable

Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 1: Week 1

DATE & TIMEVENUESTAFFEVENT
Monday
11-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Stuart MacNeill
-
Other O1: Introduction
2023-4_BL3302_O1
Session will be recorded
Tuesday
12-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Lecture L1: Transcription 1
2023-4_BL3302_L1
Session will be recorded
Wednesday
13-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Lecture L2: Transcription 2
2023-4_BL3302_L2
Session will be recorded

Semester 1: Week 2

DATE & TIMEVENUESTAFFEVENT
Monday
18-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Lecture L3: Transcription 3
2023-4_BL3302_L3
Session will be recorded
Tuesday
19-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Lecture L4: Transcription 4
2023-4_BL3302_L4
Session will be recorded
Wednesday
20-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Lecture L5: Transcription 5
2023-4_BL3302_L5
Session will be recorded

Semester 1: Week 3

DATE & TIMEVENUESTAFFEVENT
Monday
25-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Lecture L6: Transcription 6
2023-4_BL3302_L6
Session will be recorded
Tuesday
26-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Lecture L7: Transcription 7
2023-4_BL3302_L7
Session will be recorded
Wednesday
27-09-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Simon Young
-
Workshop W1: Data analysis workshop
2023-4_BL3302_W1
Session will be recorded

Semester 1: Week 4

DATE & TIMEVENUESTAFFEVENT
Monday
02-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Stuart MacNeill
-
Workshop W2: Introduction to review writing
2023-4_BL3302_W2
Session will be recorded
Tuesday
03-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Helder Ferreira
-
Lecture L8: Chromatin, histone code, etc. 1
2023-4_BL3302_L8
Session will be recorded
Wednesday
04-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Helder Ferreira
-
Lecture L9: Chromatin, histone code, etc. 2
2023-4_BL3302_L9
Session will be recorded

Semester 1: Week 5

DATE & TIMEVENUESTAFFEVENT
Monday
09-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Susan Gurney
-
Workshop W3: Introduction to lab 1
2023-4_BL3302_W3
Tuesday
10-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Helder Ferreira
-
Lecture L10: Chromatin, histone code, etc. 3
2023-4_BL3302_L10
Session will be recorded
Wednesday
11-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Helder Ferreira
-
Lecture L11: Chromatin, histone code, etc. 4
2023-4_BL3302_L11
Session will be recorded
Thursday
12-10-2023
09:00 to 17:00
Biomolecular Sciences Building
Teaching Lab RM205
Dr Susan Gurney
Dr Stuart MacNeill
Practical P1: Lab 1 (day 1)
2023-4_BL3302_P1
Friday
13-10-2023
09:00 to 17:00
Biomolecular Sciences Building
Teaching Lab RM205
Dr Susan Gurney
Dr Stuart MacNeill
Practical P2: Lab 1 (day 2)
2023-4_BL3302_P2

Semester 1: Week 7

DATE & TIMEVENUESTAFFEVENT
Monday
23-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Helder Ferreira
-
Workshop W4: Data analysis workshop
2023-4_BL3302_W4
Session will be recorded
Tuesday
24-10-2023
10:00 to 11:00
Online
Moodle
Dr Stuart MacNeill
-
Other O2: Moodle quiz 1
2023-4_BL3302_O2
Wednesday
25-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Susan Gurney
-
Workshop W5: Introduction to lab 2
2023-4_BL3302_W5

Semester 1: Week 8

DATE & TIMEVENUESTAFFEVENT
Monday
30-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Judith Sleeman
-
Lecture L12: RNA processing and nuclear dynamics 1
2023-4_BL3302_L12
Session will be recorded
Tuesday
31-10-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Judith Sleeman
-
Lecture L13: RNA processing and nuclear dynamics 2
2023-4_BL3302_L13
Session will be recorded
Wednesday
01-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Judith Sleeman
-
Lecture L14: RNA processing and nuclear dynamics 3
2023-4_BL3302_L14
Session will be recorded
Thursday
02-11-2023
09:00 to 17:00
Biomolecular Sciences Building
Teaching Lab RM205
Dr Susan Gurney
Dr Stuart MacNeill
Practical P3: Lab 2 (day 1)
2023-4_BL3302_P3
Friday
03-11-2023
09:00 to 17:00
Biomolecular Sciences Building
Teaching Lab RM205
Dr Susan Gurney
Dr Stuart MacNeill
Practical P4: Lab 2 (day 2)
2023-4_BL3302_P4

Semester 1: Week 9

DATE & TIMEVENUESTAFFEVENT
Monday
06-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Judith Sleeman
-
Lecture L15: RNA processing and nuclear dynamics 4
2023-4_BL3302_L15
Session will be recorded
Tuesday
07-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Judith Sleeman
-
Workshop W6: Data analysis workshop
2023-4_BL3302_W6
Session will be recorded
Wednesday
08-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Susan Gurney
-
Workshop W7: Introduction to lab 3
2023-4_BL3302_W7

Semester 1: Week 10

DATE & TIMEVENUESTAFFEVENT
Monday
13-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Jo Hobbs
-
Lecture L16: Translation 1
2023-4_BL3302_L16
Session will be recorded
Tuesday
14-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Jo Hobbs
-
Lecture L17: Translation 2
2023-4_BL3302_L17
Session will be recorded
Wednesday
15-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Jo Hobbs
-
Lecture L18: Translation 3
2023-4_BL3302_L18
Session will be recorded
Thursday
16-11-2023
09:00 to 17:00
Biomolecular Sciences Building
Teaching Lab RM205
Dr Susan Gurney
Dr Stuart MacNeill
Practical P5: Lab 3 (day 1)
2023-4_BL3302_P5
Friday
17-11-2023
09:00 to 17:00
Biomolecular Sciences Building
Teaching Lab RM205
Dr Susan Gurney
Dr Stuart MacNeill
Practical P6: Lab 3 (day 2)
2023-4_BL3302_P6

Semester 1: Week 11

DATE & TIMEVENUESTAFFEVENT
Monday
20-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Jo Hobbs
-
Lecture L19: Translation 4
2023-4_BL3302_L19
Session will be recorded
Tuesday
21-11-2023
10:00 to 11:00
Biomolecular Sciences Building
Seminar Room RM001
Dr Jo Hobbs
-
Workshop W8: Data analysis workshop
2023-4_BL3302_W8
Session will be recorded
Wednesday
22-11-2023
10:00 to 11:00
Online
Moodle
Dr Stuart MacNeill
-
Other O3: Moodle quiz 2
2023-4_BL3302_O3
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3302: Assessment

3-hour Written Examination = 50%, Coursework = 50%*

The following related information applies to all Biology modules:

School of Biology Marking Criteria: See JH booklet info (st-andrews.ac.uk) 
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the Biology Teaching Office, Level 2, BMS Building, North Haugh.
Exam details: See School of Biology UG Handbook JH booklet info (st-andrews.ac.uk)  : All Biology exams will be conducted online for 2022-23.
Exam timetable: See Timetables - Exams - University of St Andrews (st-andrews.ac.uk) 
Expected attendance: See JH booklet info (st-andrews.ac.uk)  for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See JH booklet info (st-andrews.ac.uk)
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: JH booklet info (st-andrews.ac.uk)
University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Before contacting staff, students should check the content of the Biology Undergraduate Handbook, the module handbook and specific task instructions.

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Dr Stuart MacNeill sam31@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Dr Stuart MacNeill sam31@st-andrews.ac.uk)
Marking on exams Module Organiser (Dr Stuart MacNeill sam31@st-andrews.ac.uk)
Rearranging practical days
Module Organiser (Dr Stuart MacNeill sam31@st-andrews.ac.uk)
Absence and/or extensions Module Organiser (Dr Stuart MacNeill sam31@st-andrews.ac.uk)

and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology UG Handbook for list:
JH booklet info (st-andrews.ac.uk)

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator ( biodisabilities@st-andrews.ac.uk )

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office (Level 2), University of St Andrews, Biomolecular Sciences Building, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk

Tel: 01334 46 3602 or 3566

BL3302: Contributing Staff

Dr Stuart MacNeill
(Module Organiser)

SULSA Reader in Translational Biologysam31@st-andrews.ac.uk
Dr Helder FerreiraLecturerhcf2@st-andrews.ac.uk
Dr Susan GurneyAssociate Lecturer in Biologysmrw@st-andrews.ac.uk
Dr Jo HobbsLecturer in Molecular Microbiologyjkh26@st-andrews.ac.uk
Dr Stuart MacNeill
(Module Organiser)
SULSA Reader in Translational Biologysam31@st-andrews.ac.uk
Dr Judith SleemanSenior Lecturer in Cell and Developmental Biologyjes14@st-andrews.ac.uk
Dr Simon YoungAssociate Lecturer (Education focused)say2@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3302: Learning Outcomes

Students completing module BL3302 successfully should be able to:

  • be able to demonstrate a good knowledge and understanding of the topics outlined in this module
  • be able to apply this knowledge and understanding to the specific areas of study in other modules
  • be able to read research papers and listen to research talks with a better understanding
  • be able to express clearly the content of research papers
  • record experimental results and interpret data as well as report findings and conclusions in a precise and clear manner
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3302: Acquired Skills

Practical Skills

  • Agarose gel
  • DNA isolation
  • Handling microbes
  • Pipetting
  • Polymerase Chain Reaction (PCR)
  • Protein purification
  • Restriction digest
  • SDS PAGE
  • Western Blot

Transferable Skills

  • Review article on given topic
  • Lab safety awareness
  • Concentrations
  • Dilutions
  • Lab or field notebook
  • Designing experiments
  • Working in pairs/small groups
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Policies

(Information in this section applies to all Biology Modules)

  • The procedures and regulations followed by the School of Biology are outlined in the University Handbook and in the School of Biology UG handbook  JH booklet info (st-andrews.ac.uk) 
  • All coursework associated with the module must be completed and submitted by its due date.
  • Specific School regulations relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, Good Academic Practice and Academic Alert are stated in the School of Biology UG hand book JH booklet info (st-andrews.ac.uk)  and students are required to carefully read these regulations.
  • Students are also referred to the University Handbook, available at: http://www.st-andrews.ac.uk/studenthandbook/