School of Biology current student

Information for current students at the School of Biology

Biology Online Module Handbook

BL3311 Infection and Disease

(BL3311 online module handbook version 32)

cover image
This module has lectures in three component areas: parasite infections, viral disease, and pathogenicity of common bacterial infections, and will include consideration of host defences and effective treatment. In all three component areas the emphasis will be on understanding at the molecular level.*

Credits: 20*

Semester: 2

Module Organiser
Dr Peter Coote
pjc5@st-andrews.ac.uk
01334 463406
Pre-requisite Modules:
Before taking this module you must pass 2 modules from {BL2301, BL2302, BL2309}.*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:


Biology Teaching Office:
Level 2, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk      Phone: +44 (0)1334 46 3602 or 3566

BL3311: Timetable

Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 2: Week 1

DATE & TIMEVENUESTAFFEVENT
Monday
15-01-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L1: Introduction - relevance of infectious disease
2023-4_BL3311_L1
Intro lecture with detail on assessment etc.
Tuesday
16-01-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L2: Pathogenicity - toll-like receptors; cytokines; inflammation; sepsis
2023-4_BL3311_L2
Wednesday
17-01-2024
10:00 to 11:00
Mathematical Institute
LTC
Dr Simon Young
-
Lecture L3: Antibody and cell-mediated immunity
2023-4_BL3311_L3

Semester 2: Week 2

DATE & TIMEVENUESTAFFEVENT
Tuesday
23-01-2024
10:00 to 11:00
Other
Utd College School II
Dr Simon Young
-
Lecture L4: Important human viruses: An introduction
2023-4_BL3311_L4
Tuesday
23-01-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Michael M Nevels
-
Practical P1: Virology Practical
2023-4_BL3311_P1
Wednesday
24-01-2024
10:00 to 11:00
Other
Utd College School II
Dr Simon Young
-
Lecture L5: What it takes to be a virus!
2023-4_BL3311_L5
Wednesday
24-01-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Michael M Nevels
-
Practical P2: Virology Practical
2023-4_BL3311_P2
Thursday
25-01-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Michael M Nevels
-
Practical P3: Virology Practical
2023-4_BL3311_P3
Friday
26-01-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Michael M Nevels
-
Practical P4: Virology Practical
2023-4_BL3311_P4

Semester 2: Week 3

DATE & TIMEVENUESTAFFEVENT
Monday
29-01-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Simon Young
-
Lecture L6: Viruses and disease I
2023-4_BL3311_L6
Tuesday
30-01-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Simon Young
-
Lecture L7: Viruses and disease II
2023-4_BL3311_L7
Wednesday
31-01-2024
10:00 to 11:00
Mathematical Institute
LTC
Dr Simon Young
-
Lecture L8: Control of virus diseases
2023-4_BL3311_L8

Semester 2: Week 4

DATE & TIMEVENUESTAFFEVENT
Monday
05-02-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Simon Young
-
Lecture L9: Virus vaccines I
2023-4_BL3311_L9
Tuesday
06-02-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Simon Young
-
Lecture L10: Virus vaccines II
2023-4_BL3311_L10
Wednesday
07-02-2024
10:00 to 11:00
Mathematical Institute
LTC
Dr Simon Young
-
Lecture L11: Antiviral drugs I
2023-4_BL3311_L11

Semester 2: Week 5

DATE & TIMEVENUESTAFFEVENT
Monday
12-02-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Simon Young
-
Lecture L12: Antiviral drugs II
2023-4_BL3311_L12
Tuesday
13-02-2024
10:00 to 11:00
Mathematical Institute
LTB
Prof Terry Smith
-
Lecture L13: Introduction to parasitology
2023-4_BL3311_L13
Wednesday
14-02-2024
10:00 to 11:00
Mathematical Institute
LTC
Prof Terry Smith
-
Lecture L14: Trypanosomatids/Apicomplexa; relevance to human health; current therapies
2023-4_BL3311_L14

Semester 2: Week 6

DATE & TIMEVENUESTAFFEVENT
Monday
19-02-2024
10:00 to 11:00
Mathematical Institute
LTB
Prof Terry Smith
-
Lecture L15: T. brucei - Cell-surface Variant Surface Glycoprotein; antigenic variation
2023-4_BL3311_L15
Monday
19-02-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Prof Terry Smith
-
Practical P5: Parasitology Practical
2023-4_BL3311_P5
Tuesday
20-02-2024
10:00 to 11:00
Mathematical Institute
LTB
Prof Terry Smith
-
Lecture L16: Structure determination and function of T. brucei/parasite GPI anchors
2023-4_BL3311_L16
Tuesday
20-02-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Prof Terry Smith
-
Practical P6: Parasitology Practical
2023-4_BL3311_P6
Wednesday
21-02-2024
10:00 to 11:00
Mathematical Institute
LTC
Prof Terry Smith
-
Lecture L17: Parasite genomes; genetic validation; techniques - conditional knockout and RNAi
2023-4_BL3311_L17
Thursday
22-02-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Prof Terry Smith
-
Practical P7: Parasitology Practical
2023-4_BL3311_P7
Friday
23-02-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Prof Terry Smith
-
Practical P8: Parasitology Practical
2023-4_BL3311_P8

Spring Break: 26-Feb-2024 to 01-Mar-2024

Semester 2: Week 7

DATE & TIMEVENUESTAFFEVENT
Monday
04-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Prof Terry Smith
-
Lecture L18: Biochemical phenotyping
2023-4_BL3311_L18
Tuesday
05-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Prof Terry Smith
-
Lecture L19: Drug discovery pipeline; from targets to lead compounds
2023-4_BL3311_L19
Wednesday
06-03-2024
10:00 to 11:00
Mathematical Institute
LTC
Prof Terry Smith
-
Lecture L20: Current research and methods/techniques used in the TKS group
2023-4_BL3311_L20

Semester 2: Week 8

DATE & TIMEVENUESTAFFEVENT
Monday
11-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L21: Introduction and Revision Lecture
2023-4_BL3311_L21
Tuesday
12-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L22: Staphylococcus species - pathogenicity and disease
2023-4_BL3311_L22
Wednesday
13-03-2024
10:00 to 11:00
Mathematical Institute
LTC
Dr Peter Coote
-
Lecture L23: Streptococcus species - pathogenicity and disease
2023-4_BL3311_L23

Semester 2: Week 9

DATE & TIMEVENUESTAFFEVENT
Monday
18-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L24: Tuberculosis - pathogenicity and disease
2023-4_BL3311_L24
Tuesday
19-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L25: Cholera - pathogenicity and disease
2023-4_BL3311_L25
Wednesday
20-03-2024
10:00 to 11:00
Mathematical Institute
LTC
Dr Peter Coote
-
Lecture L26: Typhoid - pathogenicity and disease
2023-4_BL3311_L26

Semester 2: Week 10

DATE & TIMEVENUESTAFFEVENT
Monday
25-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L27: Neisseria species - pathogenicity and disease
2023-4_BL3311_L27
Monday
25-03-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Peter Coote
-
Practical P9: Bacteriology Practical
2023-4_BL3311_P9
Tuesday
26-03-2024
10:00 to 11:00
Mathematical Institute
LTB
Dr Peter Coote
-
Lecture L28: Hospital infection and antibiotic resistance
2023-4_BL3311_L28
Tuesday
26-03-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Peter Coote
-
Practical P10: Bacteriology Practical
2023-4_BL3311_P10
Wednesday
27-03-2024
10:00 to 11:00
Mathematical Institute
LTC
Dr Peter Coote
-
Lecture L29: Germ warfare - Yersinia pestis plague and Bacillus anthracis anthrax
2023-4_BL3311_L29
Thursday
28-03-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Peter Coote
-
Practical P11: Bacteriology Practical
2023-4_BL3311_P11
Friday
29-03-2024
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab
Dr Peter Coote
-
Practical P12: Bacteriology Practical
2023-4_BL3311_P12

Semester 2: Week 11

DATE & TIMEVENUESTAFFEVENT
Friday
05-04-2024
10:00 to 11:30
Online
MMS online class practical test
Dr Peter Coote
-
Other O1: Practical examination/class test
2023-4_BL3311_O1
Short Answer Questions on delivered online practical material
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3311: Assessment

3-hour Written Examination = 50%, Coursework = 50%*

The following related information applies to all Biology modules:

School of Biology Marking Criteria: See JH booklet info (st-andrews.ac.uk) 
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the Biology Teaching Office, Level 2, BMS Building, North Haugh.
Exam details: See School of Biology UG Handbook JH booklet info (st-andrews.ac.uk)  : All Biology exams will be conducted online for 2022-23.
Exam timetable: See Timetables - Exams - University of St Andrews (st-andrews.ac.uk) 
Expected attendance: See JH booklet info (st-andrews.ac.uk)  for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See JH booklet info (st-andrews.ac.uk)
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: JH booklet info (st-andrews.ac.uk)
University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Before contacting staff, students should check the content of the Biology Undergraduate Handbook, the module handbook and specific task instructions.

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)
Marking on exams Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)
Rearranging practical days
Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)
Absence and/or extensions Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)

and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology UG Handbook for list:
JH booklet info (st-andrews.ac.uk)

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator ( biodisabilities@st-andrews.ac.uk )

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office (Level 2), University of St Andrews, Biomolecular Sciences Building, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk

Tel: 01334 46 3602 or 3566

BL3311: Contributing Staff

Dr Peter Coote
(Module Organiser)

Lecturerpjc5@st-andrews.ac.uk
Dr Peter Coote
(Module Organiser)
Lecturerpjc5@st-andrews.ac.uk
Dr Michael M NevelsReader in Virologymmn3@st-andrews.ac.uk
Prof Terry SmithProfessortks1@st-andrews.ac.uk
Dr Simon YoungAssociate Lecturer (Education focused)say2@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3311: Learning Outcomes

Students completing module BL3311 successfully should be able to:

  • Discuss key human microbial pathogens (bacteria, viruses, parasites) and the diseases they cause.
  • Use the primary literature to research the latest understanding of key topics and summarise this in essay form
  • Work safely in the laboratory with a selection of microbial pathogens
  • Analyse and interpret experimental data from a range of techniques used to study microorganisms
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3311: Acquired Skills

Practical Skills

    Transferable Skills

    • Review article on given topic
    • Finding literature
    • Concentrations
    • Dilutions
    • Produce graphs/figures
    • Lab or field notebook
    • Working in pairs/small groups
    Data Sources: information in this online module handbook is gathered from several sources.
    Small footnote marks beside content, or by section titles indicate the source.
    * University of St Andrews Module Catalogue
    School of Biology Symbiosis Database (module organisers only)
    University of St Andrews MMS (St Andrews users only)

    Policies

    (Information in this section applies to all Biology Modules)

    • The procedures and regulations followed by the School of Biology are outlined in the University Handbook and in the School of Biology UG handbook  JH booklet info (st-andrews.ac.uk) 
    • All coursework associated with the module must be completed and submitted by its due date.
    • Specific School regulations relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, Good Academic Practice and Academic Alert are stated in the School of Biology UG hand book JH booklet info (st-andrews.ac.uk)  and students are required to carefully read these regulations.
    • Students are also referred to the University Handbook, available at: http://www.st-andrews.ac.uk/studenthandbook/