Biology Online Module Handbook

BL3311 Infection and Disease

(BL3311 online module handbook version 18)

cover image
This module has lectures in three component areas: parasite infections, viral disease, and pathogenicity of common bacterial infections, and will include consideration of host defences and effective treatment. In all three component areas the emphasis will be on understanding at the molecular level.*

Credits: 20*

Semester: 2

Module Organiser
Dr Peter Coote
pjc5@st-andrews.ac.uk
01334 463406
Pre-requisite Modules:
Before taking this module you must pass BL2301 and pass BL2309*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:
Please check MMS regularly for additional module information


Biology Teaching Office:
The Biology Hive, New Technology Centre, University of St Andrews, North Haugh, St Andrews, Fife KY16 9SR

Email: bioteach@st-andrews.ac.uk      Tel: 01334  463602

BL3311: Timetable

Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 2: Week 1

DATE & TIMEVENUESTAFFEVENT
Monday
28-01-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L1: Introduction - relevance of infectious disease
2018-9_BL3311_L1
Tuesday
29-01-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L2: Pathogenicity - toll-like receptors; cytokines; inflammation; sepsis
2018-9_BL3311_L2
Wednesday
30-01-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L3: Antibody and cell-mediated immunity
2018-9_BL3311_L3

Semester 2: Week 2

DATE & TIMEVENUESTAFFEVENT
Tuesday
05-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L4: Important human viruses: An introduction
2018-9_BL3311_L4
Tuesday
05-02-2019
14:00 to 15:00
Mathematical Institute
Maths LT D
Dr Michael M Nevels

Workshop W1: Introduction to Virology Practical
2018-9_BL3311_W1
Tuesday
05-02-2019
15:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Michael M Nevels

Practical P1: Virology Practical
2018-9_BL3311_P1
Wednesday
06-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L5: What it takes to be a virus!
2018-9_BL3311_L5
Wednesday
06-02-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Michael M Nevels

Practical P2: Virology Practical
2018-9_BL3311_P2
Thursday
07-02-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Michael M Nevels

Practical P3: Virology Practical
2018-9_BL3311_P3
Friday
08-02-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Michael M Nevels

Practical P4: Virology Practical
2018-9_BL3311_P4

Semester 2: Week 3

DATE & TIMEVENUESTAFFEVENT
Monday
11-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L6: Viruses and disease I
2018-9_BL3311_L6
Tuesday
12-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L7: Viruses and disease II
2018-9_BL3311_L7
Wednesday
13-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L8: Control of virus diseases
2018-9_BL3311_L8

Semester 2: Week 4

DATE & TIMEVENUESTAFFEVENT
Monday
18-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L9: Virus vaccines I
2018-9_BL3311_L9
Tuesday
19-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L10: Virus vaccines II
2018-9_BL3311_L10
Wednesday
20-02-2019
10:00 to 11:00
Biomedical Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L11: Antiviral drugs I
2018-9_BL3311_L11

Semester 2: Week 5

DATE & TIMEVENUESTAFFEVENT
Monday
25-02-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Catherine Adamson

Lecture L12: Antiviral drugs II
2018-9_BL3311_L12
Tuesday
26-02-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Prof Terry Smith

Lecture L13: Introduction to parasitology
2018-9_BL3311_L13
Wednesday
27-02-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Prof Terry Smith

Lecture L14: Trypanosomatids/Apicomplexa; relevance to human health; current therapies
2018-9_BL3311_L14

Semester 2: Week 6

DATE & TIMEVENUESTAFFEVENT
Monday
04-03-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Prof Terry Smith

Practical P5: Parasitology Practical
2018-9_BL3311_P5
Tuesday
05-03-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Prof Terry Smith

Lecture L15: Structure determination and function of T. brucei/parasite GPI anchors
2018-9_BL3311_L15
Tuesday
05-03-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Prof Terry Smith

Practical P6: Parasitology Practical
2018-9_BL3311_P6
Wednesday
06-03-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Prof Terry Smith

Lecture L16: Parasite genomes; genetic validation; techniques - conditional knockout and RNAi
2018-9_BL3311_L16
Thursday
07-03-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Prof Terry Smith

Practical P7: Parasitology Practical
2018-9_BL3311_P7
Friday
08-03-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Prof Terry Smith

Practical P8: Parasitology Practical
2018-9_BL3311_P8

Semester 2: Week 7

DATE & TIMEVENUESTAFFEVENT
Monday
11-03-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Prof Terry Smith

Lecture L17: Biochemical phenotyping
2018-9_BL3311_L17
Tuesday
12-03-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Prof Terry Smith

Lecture L18: Drug discovery pipeline; from targets to lead compounds
2018-9_BL3311_L18
Wednesday
13-03-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Prof Terry Smith

Lecture L19: Current research and methods/techniques used in the TKS group
2018-9_BL3311_L19

Reading Week: 16-Mar-2019 to 31-Mar-2019

Semester 2: Week 8

DATE & TIMEVENUESTAFFEVENT
Monday
01-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L20: Introduction and Revision Lecture
2018-9_BL3311_L20
Tuesday
02-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L21: Staphylococcus species - pathogenicity and disease
2018-9_BL3311_L21
Wednesday
03-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L22: Streptococcus species - pathogenicity and disease
2018-9_BL3311_L22

Semester 2: Week 9

DATE & TIMEVENUESTAFFEVENT
Monday
08-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L23: Tuberculosis - pathogenicity and disease
2018-9_BL3311_L23
Tuesday
09-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L24: Cholera - pathogenicity and disease
2018-9_BL3311_L24
Wednesday
10-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L25: Typhoid - pathogenicity and disease
2018-9_BL3311_L25

Semester 2: Week 10

DATE & TIMEVENUESTAFFEVENT
Monday
15-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L26: Neisseria species - pathogenicity and disease
2018-9_BL3311_L26
Monday
15-04-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Peter Coote

Practical P9: Bacteriology Practical
2018-9_BL3311_P9
Tuesday
16-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L27: Hospital infection and antibiotic resistance
2018-9_BL3311_L27
Tuesday
16-04-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Peter Coote

Practical P10: Bacteriology Practical
2018-9_BL3311_P10
Wednesday
17-04-2019
10:00 to 11:00
Biomolecular Sciences Building
BMS LT
Dr Peter Coote

Lecture L28: Germ warfare - Yersinia pestis plague and Bacillus anthracis anthrax
2018-9_BL3311_L28
Thursday
18-04-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Peter Coote

Practical P11: Bacteriology Practical
2018-9_BL3311_P11
Friday
19-04-2019
14:00 to 17:00
Purdie Building
Large Purdie Lab
Dr Peter Coote

Practical P12: Bacteriology Practical
2018-9_BL3311_P12

Semester 2: Week 11

DATE & TIMEVENUESTAFFEVENT
Friday
26-04-2019
11:00 to 12:30
Medical and Biological Sciences Building
Biology Teaching Lab
Dr Peter Coote

Tutorial T1: Practical examination/class test
2018-9_BL3311_T1
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3311: Assessment

3-hour Written Examination = 66%, Coursework = 34%*

Assessment:
Essay
Due by:
15/03/2019 17:00
Feedback due by:
05/04/2019 17:00
Type:
Turnitin
Weight:
41.2%
Assessment:
Practical
Due by:
26/04/2019 14:00
Feedback due by:
17/05/2019 14:00
Type:
Paper Hand-in
Weight:
58.8%

(MMS assessment data cached: 21 February 2019 23:20:17.)


The following related information applies to all Biology modules:

School of Biology Marking Criteria: See School of Biology Undergraduate Handbook
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the late submissions box in the Biomolecular Science Building (beside the Teaching Office)
Exam details: See School of Biology Undergraduate Handbook
Exam timetable: see http://www.st-andrews.ac.uk/students/academic/examinations/examtimetablescurrent/
Expected attendance: See School of Biology Undergraduate Handbook for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See School of Biology Undergraduate Handbook
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: School of Biology Undergraduate Handbook University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Questions about different aspects of the module should be directed to different people:

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)
Marking on exams Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk)
Rearranging practical days Grant Brown
Absence and/or extensions Module Organiser (Dr Peter Coote pjc5@st-andrews.ac.uk) and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology Undergraduate student handbook for list: http://biology.st-andrews.ac.uk/documents/UndergraduateHandbook.pdf

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator (Dr Jacqueline Nairn jn37@st-andrews.ac.uk)

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office, The Biology Hive, New Technology Centre, University of St Andrews, North Haugh, St Andrews, Fife KY16 9SR

Email: bioteach@st-andrews.ac.uk

Tel: 01334 463602/3566

BL3311: Contributing Staff

Dr Peter Coote

Dr Peter Coote
(Module Organiser)

Lecturerpjc5@st-andrews.ac.uk
Dr Catherine AdamsonDr Catherine AdamsonLecturer in Molecular Medicinecsa21@st-andrews.ac.uk
Dr Peter CooteDr Peter Coote
(Module Organiser)
Lecturerpjc5@st-andrews.ac.uk
Dr Michael M NevelsDr Michael M NevelsReader in Virologymmn3@st-andrews.ac.uk
Prof Terry SmithProf Terry SmithProfessortks1@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3311: Learning Outcomes

Students completing module BL3311 successfully should be able to:

  • Discuss key human microbial pathogens (bacteria, viruses, parasites) and the diseases they cause.
  • Use the primary literature to research the latest understanding of key topics and summarise this in essay form
  • Work safely in the laboratory with a selection of microbial pathogens
  • Analyse and interpret experimental data from a range of techniques used to study microorganisms
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3311: Acquired Skills

Practical Skills

    Transferable Skills

    • Review article on given topic
    • Finding literature
    • Concentrations
    • Dilutions
    • Produce graphs/figures
    • Lab or field notebook
    • Working in pairs/small groups
    Data Sources: information in this online module handbook is gathered from several sources.
    Small footnote marks beside content, or by section titles indicate the source.
    * University of St Andrews Module Catalogue
    School of Biology Symbiosis Database (module organisers only)
    University of St Andrews MMS (St Andrews users only)

    Policies

    (Information in this section applies to all Biology Modules)