School of Biology current student

Information for current students at the School of Biology

Biology Online Module Handbook

BL3307 Evolution

(BL3307 online module handbook version 94)

cover image

image: The power of evolution: A male peacock spider (Maratus volans) with psychedelic spider painting on his back to attract females. Photo by Jurgen Otto.

This module examines how evolutionary processes cause the extraordinary patterns of biological variation we observe on planet Earth, and the approaches that modern research programmes use to study this. Topics include: adaptation, molecular variation and phylogenetics; the evolution of sex; genetics of continuous traits; evolutionary developmental biology; population genetics; speciation, and evolutionary genomics. Practicals will involve computer simulations to investigate a range of evolutionary phenomena, plus use of molecular markers to examine population structure and speciation.*

Credits: 20*

Semester: 1

Module Organiser
Prof Nathan Bailey
nwb3@st-andrews.ac.uk
01334 463367
Pre-requisite Modules:
Before taking this module you must pass BL2303 or pass BL2307*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:


Biology Teaching Office:
Level 2, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk      Phone: +44 (0)1334 46 3602 or 3566

BL3307: Timetable

Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 1: Week 1

DATE & TIMEVENUESTAFFEVENT
Monday
11-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L1: Introduction: contemporary evolution
2023-4_BL3307_L1
Tuesday
12-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
tbd
-
Lecture L2: Flipped lecture
2023-4_BL3307_L2
Wednesday
13-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L3: Background to assignment
2023-4_BL3307_L3

Semester 1: Week 2

DATE & TIMEVENUESTAFFEVENT
Monday
18-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L4: Adaptation
2023-4_BL3307_L4
Tuesday
19-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L5: Selection
2023-4_BL3307_L5
Wednesday
20-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L6: Polymorphism
2023-4_BL3307_L6
Wednesday
20-09-2023
17:00 to 17:00
Other
Prof Nathan Bailey
-
Other O1: DUE DATE: Project topic
2023-4_BL3307_O1
via email

Semester 1: Week 3

DATE & TIMEVENUESTAFFEVENT
Monday
25-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Mike Ritchie
-
Lecture L7: Natural selection, linkage, & epistasis
2023-4_BL3307_L7
Tuesday
26-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Mike Ritchie
-
Lecture L8: Adaptive landscapes
2023-4_BL3307_L8
Wednesday
27-09-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Mike Ritchie
-
Lecture L9: Genetic revolutions
2023-4_BL3307_L9

Semester 1: Week 4

DATE & TIMEVENUESTAFFEVENT
Monday
02-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Carolin Kosiol
-
Lecture L10: Phylogenetics & selection I
2023-4_BL3307_L10
Tuesday
03-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Carolin Kosiol
-
Lecture L11: Phylogenetics & selection II
2023-4_BL3307_L11
Wednesday
04-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Carolin Kosiol
-
Lecture L12: Phylogenetics & selection III
2023-4_BL3307_L12
Friday
06-10-2023
09:00 to 11:00
Bute Building
Bute PC room / online
Dr Carolin Kosiol
-
Practical P1: Phylogenetics & selection (session 1)
2023-4_BL3307_P1
Friday
06-10-2023
12:00 to 14:00
Bute Building
Bute PC room / online
Dr Carolin Kosiol
-
Practical P2: Phylogenetics & selection (session 2)
2023-4_BL3307_P2

Semester 1: Week 5

DATE & TIMEVENUESTAFFEVENT
Monday
09-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Andy Gardner
-
Lecture L13: Price equation
2023-4_BL3307_L13
Tuesday
10-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Andy Gardner
-
Lecture L14: Kin selection
2023-4_BL3307_L14
Wednesday
11-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Andy Gardner
-
Lecture L15: Multilevel selection
2023-4_BL3307_L15

Semester 1: Week 7

DATE & TIMEVENUESTAFFEVENT
Monday
23-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Miguel Barbosa
-
Lecture L16: Community ecology
2023-4_BL3307_L16
Tuesday
24-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Miguel Barbosa
-
Lecture L17: Contemporary evolution
2023-4_BL3307_L17
Wednesday
25-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Miguel Barbosa
-
Lecture L18: Case studies
2023-4_BL3307_L18
Wednesday
25-10-2023
17:00 to 17:00
Online

-
Other O2: DUE DATE: Practical 1 report
2023-4_BL3307_O2
Submit via Turnitin

Semester 1: Week 8

DATE & TIMEVENUESTAFFEVENT
Monday
30-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Michael Morrissey
-
Lecture L19: Single locus model
2023-4_BL3307_L19
Tuesday
31-10-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Michael Morrissey
-
Lecture L20: Infinitesimal model
2023-4_BL3307_L20
Wednesday
01-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Michael Morrissey
-
Lecture L21: The breeder.s equation
2023-4_BL3307_L21
Thursday
02-11-2023
09:00 to 11:00
Bute Building
Bute PC room / online
Dr Michael Morrissey
-
Practical P3: QG practical (session 1)
2023-4_BL3307_P3
Thursday
02-11-2023
12:00 to 14:00
Bute Building
Bute PC room / online
Dr Michael Morrissey
-
Practical P4: QG practical (session 2)
2023-4_BL3307_P4

Semester 1: Week 9

DATE & TIMEVENUESTAFFEVENT
Monday
06-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Michael Morrissey
-
Lecture L22: Wild evolution
2023-4_BL3307_L22
Tuesday
07-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L23: Phenotypic plasticity
2023-4_BL3307_L23
Wednesday
08-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L24: EvoDevo
2023-4_BL3307_L24
Wednesday
08-11-2023
17:00 to 17:00
Online

-
Other O3: DUE DATE: Practical 2 write-up
2023-4_BL3307_O3
Submit via Turnitin

Semester 1: Week 10

DATE & TIMEVENUESTAFFEVENT
Monday
13-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L25: Evolution of behaviour
2023-4_BL3307_L25
Tuesday
14-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L26: Adaptation genomics I
2023-4_BL3307_L26
Wednesday
15-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D

-
Lecture L27: Adaptation genomics II
2023-4_BL3307_L27

Semester 1: Week 11

DATE & TIMEVENUESTAFFEVENT
Monday
20-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L28: Project judging
2023-4_BL3307_L28
Monday
20-11-2023
11:00 to 11:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Other O4: DUE DATE: Final project
2023-4_BL3307_O4
In person or submitted via MMS if online
Tuesday
21-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Dr Mauricio Gonzalez Forero
-
Lecture L29: Brain evolution: history and controversies
2023-4_BL3307_L29
Wednesday
22-11-2023
11:00 to 12:00
Bute Building
Lecture Theatre D
Prof Nathan Bailey
-
Lecture L30: Review and Q & A
2023-4_BL3307_L30
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3307: Assessment

3-hour Written Examination = 50%, Coursework = 50%*

The following related information applies to all Biology modules:

School of Biology Marking Criteria: See JH booklet info (st-andrews.ac.uk) 
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the Biology Teaching Office, Level 2, BMS Building, North Haugh.
Exam details: See School of Biology UG Handbook JH booklet info (st-andrews.ac.uk)  : All Biology exams will be conducted online for 2022-23.
Exam timetable: See Timetables - Exams - University of St Andrews (st-andrews.ac.uk) 
Expected attendance: See JH booklet info (st-andrews.ac.uk)  for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See JH booklet info (st-andrews.ac.uk)
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: JH booklet info (st-andrews.ac.uk)
University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Before contacting staff, students should check the content of the Biology Undergraduate Handbook, the module handbook and specific task instructions.

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Prof Nathan Bailey nwb3@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Prof Nathan Bailey nwb3@st-andrews.ac.uk)
Marking on exams Module Organiser (Prof Nathan Bailey nwb3@st-andrews.ac.uk)
Rearranging practical days
Module Organiser (Prof Nathan Bailey nwb3@st-andrews.ac.uk)
Absence and/or extensions Module Organiser (Prof Nathan Bailey nwb3@st-andrews.ac.uk)

and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology UG Handbook for list:
JH booklet info (st-andrews.ac.uk)

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator ( biodisabilities@st-andrews.ac.uk )

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office (Level 2), University of St Andrews, Biomolecular Sciences Building, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk

Tel: 01334 46 3602 or 3566

BL3307: Contributing Staff

Prof Nathan Bailey
(Module Organiser)

Professornwb3@st-andrews.ac.uk
Prof Nathan Bailey
(Module Organiser)
Professornwb3@st-andrews.ac.uk
Dr Miguel BarbosaLecturer in Marine Biologymb334@st-andrews.ac.uk
Prof Andy GardnerProfessor of Biologyag243@st-andrews.ac.uk
Dr Mauricio Gonzalez ForeroResearch Fellowmgf3@st-andrews.ac.uk
Dr Carolin KosiolReaderck202@st-andrews.ac.uk
Dr Michael MorrisseyResearch Fellowmbm5@st-andrews.ac.uk
Prof Mike RitchieProfessormgr@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3307: Learning Outcomes

Students completing module BL3307 successfully should be able to:

  • Understand the basic processes of population genetics underlying evolutionary change.
  • Understand the genetic basis of continuous variation and its importance in population differentiation and speciation.
  • Know how to analyze molecular variation for examining genetic diversity and population structure.
  • Understand how evolution occurs at the molecular level.
  • Develop skills for quantitative analysis of evolutionary change.
  • Acquire experience of working independently and together in groups.
  • Develop skills for scientific exploration and discovery.
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL3307: Acquired Skills

Practical Skills

  • Mendelian genetics

Transferable Skills

  • "Full" practical write-up (Intro, Methods, Results, Discussion)
  • "Short" practical write-up (e.g. completed worksheet)
  • Short essay (1000-2000 words)
  • Critically evaluating sources/information
  • Finding information on the web
  • Finding literature
  • Referencing
  • Computer programming
  • Problem-solving questions
  • Calculations/equations
  • Descriptive statistics
  • Likelihood
  • Non-linear fit
  • Other mathematical models
  • Produce tables
  • Use Excel
  • Use other data analysis software
  • Use R or R Studio
  • Working in pairs/small groups
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Policies

(Information in this section applies to all Biology Modules)

  • The procedures and regulations followed by the School of Biology are outlined in the University Handbook and in the School of Biology UG handbook  JH booklet info (st-andrews.ac.uk) 
  • All coursework associated with the module must be completed and submitted by its due date.
  • Specific School regulations relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, Good Academic Practice and Academic Alert are stated in the School of Biology UG hand book JH booklet info (st-andrews.ac.uk)  and students are required to carefully read these regulations.
  • Students are also referred to the University Handbook, available at: http://www.st-andrews.ac.uk/studenthandbook/