School of Biology current student

Information for current students at the School of Biology

Biology Online Module Handbook

BL2302 Molecular Biology

(BL2302 online module handbook version 71)

cover image
Molecular biology is an essential tool within modern biology, widely used in biochemistry, cell biology and ecology. This module will provide an introduction to modern molecular biology. Lectures will cover fundamental biological processes such as transcription, translation, DNA replication and repair - as well as touch on the genomics revolution and how this has influenced the field. These concepts will be reinforced through laboratory practical classes where students will develop their practical skills and be exposed to the use of basic bioinformatics resources to analyse and interpret data.*

Credits: 15*

Semester: 1

Module Organiser
Dr Helder Ferreira
hcf2@st-andrews.ac.uk
01334 463425
Pre-requisite Modules:
Before taking this module you must pass BL1101 and pass BL1102*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:


Biology Teaching Office:
Level 2, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk      Phone: +44 (0)1334 46 3602 or 3566

BL2302: Timetable

Please note that all events are still provisional at this stage and subject to change


Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 1: Week 1

DATE & TIMEVENUESTAFFEVENT
Thursday
14-09-2023
09:00 to 10:00
Purdie Building
Lecture Theatre B
Dr Helder Ferreira
-
Lecture L1: Introduction to molecular biology
2023-4_BL2302_L1
Friday
15-09-2023
09:00 to 10:00
Purdie Building
Lecture Theatre B
Dr Helder Ferreira
-
Lecture L2: Transcription
2023-4_BL2302_L2

Semester 1: Week 2

DATE & TIMEVENUESTAFFEVENT
Monday
18-09-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Helder Ferreira
-
Practical P1: Fundamental lab skills
2023-4_BL2302_P1
Tuesday
19-09-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Helder Ferreira
-
Practical P2: Fundamental lab skills
2023-4_BL2302_P2
Wednesday
20-09-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Helder Ferreira
-
Lecture L3: mRNA processing
2023-4_BL2302_L3
Thursday
21-09-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Helder Ferreira
-
Lecture L4: Non-coding RNA
2023-4_BL2302_L4
Friday
22-09-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Helder Ferreira
-
Lecture L5: Gene regulation
2023-4_BL2302_L5

Semester 1: Week 3

DATE & TIMEVENUESTAFFEVENT
Thursday
28-09-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Michela Cerone
-
Lecture L6: Translation I
2023-4_BL2302_L6
Friday
29-09-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Michela Cerone
-
Lecture L7: Translation II
2023-4_BL2302_L7

Semester 1: Week 4

DATE & TIMEVENUESTAFFEVENT
Monday
02-10-2023
14:00 to 15:50
Biomolecular Sciences Building
BMS 205
Dr Helder Ferreira
-
Practical P3: Basic bioinformatics - DNA sequence handling
2023-4_BL2302_P3
Please use MMS to select timeslot AND if you require a laptop
Monday
02-10-2023
16:00 to 17:50
Biomolecular Sciences Building
BMS 205
Dr Helder Ferreira
-
Practical P4: Please use MMS to select timeslot AND if you require a laptop
2023-4_BL2302_P4
Tuesday
03-10-2023
14:00 to 15:50
Biomolecular Sciences Building
BMS 205
Dr Helder Ferreira
-
Practical P5: Basic bioinformatics - DNA sequence handling
2023-4_BL2302_P5
Please use MMS to select timeslot AND if you require a laptop
Tuesday
03-10-2023
16:00 to 17:50
Biomolecular Sciences Building
BMS 205
Dr Helder Ferreira
-
Practical P6: Please use MMS to select timeslot AND if you require a laptop
2023-4_BL2302_P6
Wednesday
04-10-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Helder Ferreira
-
Lecture L8: Review of basic bioinformatics
2023-4_BL2302_L8
Thursday
05-10-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L9: DNA structure and sequencing
2023-4_BL2302_L9
Friday
06-10-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L10: Genome structure and sequencing
2023-4_BL2302_L10

Semester 1: Week 5

DATE & TIMEVENUESTAFFEVENT
Tuesday
10-10-2023
18:00 to 18:30
Online
Teams (live)
Dr Helder Ferreira
-
Tutorial T1: Bioinformatics drop-in session
2023-4_BL2302_T1
Thursday
12-10-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Michela Cerone
-
Lecture L11: translation
2023-4_BL2302_L11
Friday
13-10-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Michela Cerone
-
Lecture L12: regulation of translation
2023-4_BL2302_L12

Semester 1: Week 7

DATE & TIMEVENUESTAFFEVENT
Monday
23-10-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Stuart MacNeill
-
Practical P7: PCR
2023-4_BL2302_P7
Tuesday
24-10-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Stuart MacNeill
-
Practical P8: PCR
2023-4_BL2302_P8
Thursday
26-10-2023
09:00 to 10:00
Online
Moodle
Dr Helder Ferreira
-
Other O1: mid-module test
2023-4_BL2302_O1
assessed via Moodle
Friday
27-10-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L13: DNA replication
2023-4_BL2302_L13

Semester 1: Week 8

DATE & TIMEVENUESTAFFEVENT
Wednesday
01-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L14: DNA replication II
2023-4_BL2302_L14
Thursday
02-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L15: DNA replication III
2023-4_BL2302_L15
Friday
03-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Simon Young
-
Lecture L16: DNA damage and Direct Repair
2023-4_BL2302_L16

Semester 1: Week 9

DATE & TIMEVENUESTAFFEVENT
Monday
06-11-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Stuart MacNeill
-
Practical P9: Plasmid purification and restriction digest
2023-4_BL2302_P9
Tuesday
07-11-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Stuart MacNeill
-
Practical P10: Plasmid purification and restriction digest
2023-4_BL2302_P10
Thursday
09-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Simon Young
-
Lecture L17: Excision repair
2023-4_BL2302_L17
Friday
10-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Simon Young
-
Lecture L18: Mismatch Repair and Double-strand break Repair
2023-4_BL2302_L18

Semester 1: Week 10

DATE & TIMEVENUESTAFFEVENT
Wednesday
15-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Simon Young
-
Lecture L19: Origins of molecular biology
2023-4_BL2302_L19
Thursday
16-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L20: Review of minipreps and PCR
2023-4_BL2302_L20
Friday
17-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L21: Transposition
2023-4_BL2302_L21

Semester 1: Week 11

DATE & TIMEVENUESTAFFEVENT
Monday
20-11-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Helder Ferreira
-
Practical P11: Inducing and measuring YFP expression
2023-4_BL2302_P11
Tuesday
21-11-2023
14:00 to 17:00
Biomolecular Sciences Building
BMS 205a
Dr Helder Ferreira
-
Practical P12: Inducing and measuring YFP expression
2023-4_BL2302_P12
Thursday
23-11-2023
09:00 to 10:00
Buchanan Building
Lecture Theatre
Dr Stuart MacNeill
-
Lecture L22: Genomics
2023-4_BL2302_L22
Friday
24-11-2023
09:00 to 10:00
Online
Moodle
Dr Helder Ferreira
-
Other O2: end-of-module test
2023-4_BL2302_O2
assessed via Moodle
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL2302: Assessment

2-hour Written Examination = 50%, Coursework = 50%*

The following related information applies to all Biology modules:

School of Biology Marking Criteria: See JH booklet info (st-andrews.ac.uk) 
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the Biology Teaching Office, Level 2, BMS Building, North Haugh.
Exam details: See School of Biology UG Handbook JH booklet info (st-andrews.ac.uk)  : All Biology exams will be conducted online for 2022-23.
Exam timetable: See Timetables - Exams - University of St Andrews (st-andrews.ac.uk) 
Expected attendance: See JH booklet info (st-andrews.ac.uk)  for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See JH booklet info (st-andrews.ac.uk)
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: JH booklet info (st-andrews.ac.uk)
University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Before contacting staff, students should check the content of the Biology Undergraduate Handbook, the module handbook and specific task instructions.

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Dr Helder Ferreira hcf2@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Dr Helder Ferreira hcf2@st-andrews.ac.uk)
Marking on exams Module Organiser (Dr Helder Ferreira hcf2@st-andrews.ac.uk)
Rearranging practical days
Module Organiser (Dr Helder Ferreira hcf2@st-andrews.ac.uk)
Absence and/or extensions Module Organiser (Dr Helder Ferreira hcf2@st-andrews.ac.uk)

and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology UG Handbook for list:
JH booklet info (st-andrews.ac.uk)

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator ( biodisabilities@st-andrews.ac.uk )

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office (Level 2), University of St Andrews, Biomolecular Sciences Building, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk

Tel: 01334 46 3602 or 3566

BL2302: Contributing Staff

Dr Helder Ferreira
(Module Organiser)

Lecturerhcf2@st-andrews.ac.uk
Dr Michela CeroneLecturer in Biochemistrymc319@st-andrews.ac.uk
Dr Helder Ferreira
(Module Organiser)
Lecturerhcf2@st-andrews.ac.uk
Dr Stuart MacNeillSULSA Reader in Translational Biologysam31@st-andrews.ac.uk
Dr Simon YoungAssociate Lecturer (Education focused)say2@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL2302: Learning Outcomes

Students completing module BL2302 successfully should be able to:

  • Describe fundamental processes such as transcription, translation, DNA replication and repair
  • Develop an awareness of the genomics revolution and its impact on Biology
  • Develp practical skills in Molecular Biology
  • Develop skills required for Bioinformatic studies
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL2302: Acquired Skills

Practical Skills

  • Agarose gel
  • Buffers
  • DNA isolation
  • Handling microbes
  • Kinetic data analysis
  • Pipetting
  • Polymerase Chain Reaction (PCR)
  • Restriction digest

Transferable Skills

  • "Short" practical write-up (e.g. completed worksheet)
  • Searching databases
  • Generating questions
  • Lab safety awareness
  • Reflective analysis
  • Problem-solving questions
  • Calculations/equations
  • Data analysis
  • Data presentation
  • Use other data analysis software
  • Working in pairs/small groups
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Policies

(Information in this section applies to all Biology Modules)

  • The procedures and regulations followed by the School of Biology are outlined in the University Handbook and in the School of Biology UG handbook  JH booklet info (st-andrews.ac.uk) 
  • All coursework associated with the module must be completed and submitted by its due date.
  • Specific School regulations relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, Good Academic Practice and Academic Alert are stated in the School of Biology UG hand book JH booklet info (st-andrews.ac.uk)  and students are required to carefully read these regulations.
  • Students are also referred to the University Handbook, available at: http://www.st-andrews.ac.uk/studenthandbook/