School of Biology current student

Information for current students at the School of Biology

Biology Online Module Handbook

BL2300 Research Methods in Biology

(BL2300 online module handbook version 94)

cover image

image: © Leica Microsystems

This module will help students develop essential academic and transferable skills, with major emphasis on problem solving. It will provide an introduction to the scientific method, experimental design, understanding and presenting data. Students will learn how to draw graphs and do simple general linear modelling with the code-based statistical software R. Confidence in using R will be built through a combination of online video walk-throughs, independent data handling and online tutorials. Regular mathematics for biologists exercises will allow students to practise manipulating equations, performing laboratory calculations etc. A mini project on experimental design and data analysis, which the students conduct in small groups, will help them apply the principles learned. The module will also cover scientific essay writing, record keeping and good laboratory practice.*

Credits: 15*

Semester: 1

Module Organiser
Dr Verena Dietrich-Bischoff
vdb@st-andrews.ac.uk
01334 464812
Pre-requisite Modules:
Before taking this module you must pass BL1101 and pass BL1102*
Anti-requisite Modules:
*
Post-requisite Modules:
*
Additional Module Information:


Biology Teaching Office:
Level 2, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk      Phone: +44 (0)1334 46 3602 or 3566

BL2300: Timetable

Legend (not all modules have every event type):
lecture
tutorial
workshop
practical
other

Semester 1: Week 1

DATE & TIMEVENUESTAFFEVENT
Tuesday
12-09-2023
12:00 to 13:00
United College School III
Ms Vicki Cormie
-
Other O1: Introduction to Scientific Databases and the Reference Manager Mendeley
2023-4_BL2300_O1
If possible, please bring a laptop with Mendeley installed on it.
Thursday
14-09-2023
12:00 to 13:00
United College School III
Prof Graeme Ruxton
-
Lecture L1: Experimental Design 1
2023-4_BL2300_L1

Semester 1: Week 2

DATE & TIMEVENUESTAFFEVENT
Wednesday
20-09-2023
12:00 to 13:00
United College School III
Prof Graeme Ruxton
-
Lecture L2: Experimental Design 2
2023-4_BL2300_L2
Friday
22-09-2023
12:00 to 13:00
United College School III
Prof Graeme Ruxton
-
Lecture L3: Experimental Design 3
2023-4_BL2300_L3

Semester 1: Week 3

DATE & TIMEVENUESTAFFEVENT
Tuesday
26-09-2023
12:00 to 13:00
United College School III
Dr Verena Dietrich-Bischoff
-
Lecture L4: Basic Statistics: Describing a Single Sample, Null Hypothesis Significance Testing
2023-4_BL2300_L4
Wednesday
27-09-2023
14:00 to 17:00
Bute Building
Computer Room
Dr Verena Dietrich-Bischoff
Dr Clarissa Czekster
Dr Susan Gurney
Dr Julie Oswald
Practical P1: Mini Project: Experimental Proposal Groupwork
2023-4_BL2300_P1
Thursday
28-09-2023
12:00 to 13:00
United College School III
Dr Verena Dietrich-Bischoff
-
Lecture L5: Basic Statistics: Frequencies
2023-4_BL2300_L5
Thursday
28-09-2023
14:00 to 17:00
Bute Building
Computer Room
Dr Verena Dietrich-Bischoff
Dr Clarissa Czekster
Dr Susan Gurney
Dr Julie Oswald
Practical P2: Mini Project: Experimental Proposal Groupwork
2023-4_BL2300_P2
Friday
29-09-2023
14:00 to 17:00
Bute Building
Computer Room
Dr Verena Dietrich-Bischoff
Dr Clarissa Czekster
Dr Susan Gurney
Dr Julie Oswald
Practical P3: Mini Project: Experimental Proposal Groupwork
2023-4_BL2300_P3

Semester 1: Week 4

DATE & TIMEVENUESTAFFEVENT
Wednesday
04-10-2023
12:00 to 13:00
United College School III
Prof Will Cresswell
-
Lecture L6: Statistics Introduction and Q&A
2023-4_BL2300_L6
Wednesday
04-10-2023
14:00 to 17:00
Bute Building
Computer Room
Ms Maria Joao Janeiro da Silva
-
Practical P4: Statistics with R: Graph Drawing
2023-4_BL2300_P4
Thursday
05-10-2023
14:00 to 17:00
Bute Building
Computer Room
Ms Maria Joao Janeiro da Silva
-
Practical P5: Statistics with R: Graph Drawing
2023-4_BL2300_P5
Friday
06-10-2023
12:00 to 13:00
United College School III
Prof Oscar Gaggiotti
-
Lecture L7: The New Eugenics and Incipient Racism in Modern Biological Research
2023-4_BL2300_L7
Friday
06-10-2023
14:00 to 17:00
Bute Building
Computer Room
Ms Maria Joao Janeiro da Silva
-
Practical P6: Statistics with R: Graph Drawing
2023-4_BL2300_P6

Semester 1: Week 5

DATE & TIMEVENUESTAFFEVENT
Tuesday
10-10-2023
12:00 to 13:00
United College School III
Dr Clarissa Czekster
-
Tutorial T1: Maths for Biologists 1: Laboratory Calculations I
2023-4_BL2300_T1
Thursday
12-10-2023
12:00 to 13:00
United College School III
Dr Clarissa Czekster
-
Tutorial T2: Maths for Biologists 2: Laboratory Calculations II
2023-4_BL2300_T2

Semester 1: Week 7

DATE & TIMEVENUESTAFFEVENT
Tuesday
24-10-2023
12:00 to 13:00
United College School III
Dr Verena Dietrich-Bischoff
-
Lecture L8: Lab Safety and Record Keeping
2023-4_BL2300_L8
Wednesday
25-10-2023
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab (Room 205)
Dr Verena Dietrich-Bischoff
Dr Clarissa Czekster
Dr Susan Gurney
Dr Julie Oswald
Practical P7: Mini Project: Experimental Session
2023-4_BL2300_P7
Please bring your lab coat and lab notebook. Note that the marine projects will run in the SOI Teaching Lab.
Thursday
26-10-2023
12:00 to 13:00
United College School III
Prof Will Cresswell
-
Lecture L9: Statistics Theory - Q&A Session
2023-4_BL2300_L9
Thursday
26-10-2023
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab (Room 205)
Dr Verena Dietrich-Bischoff
Dr Clarissa Czekster
Dr Susan Gurney
Dr Julie Oswald
Practical P8: Mini Project: Experimental Session
2023-4_BL2300_P8
Please bring your lab coat and lab notebook. Note that the marine projects will run in the SOI Teaching Lab.
Friday
27-10-2023
14:00 to 17:00
Biomolecular Sciences Building
Teaching Lab (Room 205)
Dr Verena Dietrich-Bischoff
Dr Clarissa Czekster
Dr Susan Gurney
Dr Julie Oswald
Practical P9: Mini Project: Experimental Session
2023-4_BL2300_P9
Please bring your lab coat and lab notebook. Note that the marine projects will run in the SOI Teaching Lab.

Semester 1: Week 8

DATE & TIMEVENUESTAFFEVENT
Wednesday
01-11-2023
12:00 to 13:00
United College School III
Prof Will Cresswell
-
Lecture L10: Statistics Theory - Q&A Session
2023-4_BL2300_L10
Wednesday
01-11-2023
14:00 to 17:00
Bute Building
Computer Room
Ms Maria Joao Janeiro da Silva
-
Practical P10: Statistics with R: General Linear Modelling
2023-4_BL2300_P10
Thursday
02-11-2023
14:00 to 17:00
Bute Building
Computer Room
Ms Maria Joao Janeiro da Silva
-
Practical P11: Statistics with R: General Linear Modelling
2023-4_BL2300_P11
Friday
03-11-2023
12:00 to 13:00
United College School III
Prof Graeme Ruxton
-
Tutorial T3: Maths for Biologists 3
2023-4_BL2300_T3
Friday
03-11-2023
14:00 to 17:00
Bute Building
Computer Room
Ms Maria Joao Janeiro da Silva
-
Practical P12: Statistics with R: General Linear Modelling
2023-4_BL2300_P12

Semester 1: Week 9

DATE & TIMEVENUESTAFFEVENT
Tuesday
07-11-2023
12:00 to 13:00
United College School III
Prof Graeme Ruxton
Dr Clarissa Czekster
Tutorial T4: Maths for Biologists 4
2023-4_BL2300_T4
Wednesday
08-11-2023
14:00 to 17:00
Bute Building
Computer Room
Dr Verena Dietrich-Bischoff
-
Practical P13: Statistics with R: Drop-in Practice Session
2023-4_BL2300_P13
Attendance is optional; please sign up on MMS if you want to attend.
Thursday
09-11-2023
12:00 to 13:00
United College School III
Dr Verena Dietrich-Bischoff
-
Other O2: Maths MCQ Test
2023-4_BL2300_O2
The class will be split for this, with one half sitting the test in UCO School III and the other half in the Biology Teaching Lab. Please check the spreadsheet on Moodle for your location. If you are allowed extra time in class tests, you will sit the test in a different venue (you will be notified about this individually). Please bring a calculator, pencil and eraser.
Thursday
09-11-2023
14:00 to 17:00
Mathematical Institute
Computer Room
Dr Verena Dietrich-Bischoff
-
Practical P14: Statistics with R: Drop-in Practice Session
2023-4_BL2300_P14
Attendance is optional; please sign up on MMS if you want to attend.
Friday
10-11-2023
14:00 to 17:00
Bute Building
Computer Room
Dr Verena Dietrich-Bischoff
-
Practical P15: Statistics with R: Drop-in Practice Session
2023-4_BL2300_P15
Attendance is optional; please sign up on MMS if you want to attend.

Semester 1: Week 10

DATE & TIMEVENUESTAFFEVENT
Wednesday
15-11-2023
12:00 to 13:00
United College School III
Dr Verena Dietrich-Bischoff
-
Lecture L11: Basic Statistics: Other Simple Statistical Tests
2023-4_BL2300_L11
Wednesday
15-11-2023
14:00 to 17:00
Bute Building
Computer Room
Dr Verena Dietrich-Bischoff
-
Practical P16: Statistics with R: Independent R Exercise
2023-4_BL2300_P16
In this session, you will start working on the assessed R exercise. Support will be available from staff and demonstrators.
Thursday
16-11-2023
14:00 to 17:00
Mathematical Institute
Computer Room
Dr Verena Dietrich-Bischoff
-
Practical P17: Statistics with R: Independent R Exercise
2023-4_BL2300_P17
In this session, you will start working on the assessed R exercise. Support will be available from staff and demonstrators.
Friday
17-11-2023
12:00 to 13:00
United College School III
khs4
-
Other O3: Careers Talk
2023-4_BL2300_O3
Ricky Shek from the Careers Centre will provide information on Careers Centre resources and give advice on work experience, internships etc.
Friday
17-11-2023
14:00 to 17:00
Bute Building
Computer Room
Dr Verena Dietrich-Bischoff
-
Practical P18: Statistics with R: Independent R Exercise
2023-4_BL2300_P18
In this session, you will start working on the assessed R exercise. Support will be available from staff and demonstrators.

Semester 1: Week 11

DATE & TIMEVENUESTAFFEVENT
Tuesday
21-11-2023
12:00 to 13:00
United College School III
Dr Verena Dietrich-Bischoff
-
Other O4: Module Feedback
2023-4_BL2300_O4
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL2300: Assessment

Coursework = 100%*

The following related information applies to all Biology modules:

School of Biology Marking Criteria: See JH booklet info (st-andrews.ac.uk) 
Late submission of continuous assessment work:

All late submissions of coursework that do not require electronic submission should be made via the Biology Teaching Office, Level 2, BMS Building, North Haugh.
Exam details: See School of Biology UG Handbook JH booklet info (st-andrews.ac.uk)  : All Biology exams will be conducted online for 2022-23.
Exam timetable: See Timetables - Exams - University of St Andrews (st-andrews.ac.uk) 
Expected attendance: See JH booklet info (st-andrews.ac.uk)  for detailed attendance requirements.
Good Academic Practice & Avoiding Academic Misconduct: See JH booklet info (st-andrews.ac.uk)
University Student Handbook: University Student Handbook
School and University regulations in the School and University Undergraduate Handbook relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, good academic practice and Academic Alerts.: JH booklet info (st-andrews.ac.uk)
University Student Handbook
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Who to ask

(Information in this section applies to all Biology Modules)

Before contacting staff, students should check the content of the Biology Undergraduate Handbook, the module handbook and specific task instructions.

Questions about Contact
General teaching matters Biology Teaching Office ( bioteach@st-andrews.ac.uk )
Rescheduled or cancelled events Check your University email
Lecture or practical content The lecturer who presented the material
Completing assessed practical assignments The lecturer who set the assignment
Completing assessments Module Organiser (Dr Verena Dietrich-Bischoff vdb@st-andrews.ac.uk)
Marking on continuous assessment The Demonstrator or Module Organiser (Dr Verena Dietrich-Bischoff vdb@st-andrews.ac.uk)
Marking on exams Module Organiser (Dr Verena Dietrich-Bischoff vdb@st-andrews.ac.uk)
Rearranging practical days
Module Organiser (Dr Verena Dietrich-Bischoff vdb@st-andrews.ac.uk)
Absence and/or extensions Module Organiser (Dr Verena Dietrich-Bischoff vdb@st-andrews.ac.uk)

and the Biology Teaching Office ( bioteach@st-andrews.ac.uk )

Difficulties with academic progress which impact more than one module:

Year Coordinator

See School of Biology UG Handbook for list:
JH booklet info (st-andrews.ac.uk)

Overall performance, progress or future directions:

Advisor of Studies

Disability:

Disability Coordinator ( biodisabilities@st-andrews.ac.uk )

For advice and support on any issue e.g. academic, financial, international, personal or health matters, or if you are unsure of who to go to for help:

Advice & Support Centre

Address: 79 North Street, St Andrews

Email: theasc@st-andrews.ac.uk

Web: https://www.standrews.ac.uk/ask-a-question/

Tel: 01334 462020

University assistance with urgent matters out of office hours:

Tel: 01334 476161

Web: https://www.st-andrews.ac.uk/students/advice/counselling/incrisis/

Biology Teaching Office:

We are happy to hear from you about teaching matters. The School of Biology Teaching Office is open Monday to Friday 09.00 - 13.00 and 14.00 - 17.00. School of Biology staff will respond to your emails during these hours. Our team will provide a response to you within three working days.

Biology Teaching Office (Level 2), University of St Andrews, Biomolecular Sciences Building, North Haugh, St Andrews, Fife KY16 9ST

Email: bioteach@st-andrews.ac.uk

Tel: 01334 46 3602 or 3566

BL2300: Contributing Staff

Dr Verena Dietrich-Bischoff
(Module Organiser)

Lecturer (Education-Focused)vdb@st-andrews.ac.uk
Ms Vicki CormieAcademic Librarianvhc1@st-andrews.ac.uk
Prof Will CresswellProfessor of Biologywrlc@st-andrews.ac.uk
Dr Clarissa CzeksterWellcome Trust Sir Henry Dale Fellow and Lecturercmc27@st-andrews.ac.uk
Dr Verena Dietrich-Bischoff
(Module Organiser)
Lecturer (Education-Focused)vdb@st-andrews.ac.uk
Prof Oscar GaggiottiMASTS Professoroeg@st-andrews.ac.uk
Dr Susan GurneyAssociate Lecturer in Biologysmrw@st-andrews.ac.uk
Ms Maria Joao Janeiro da SilvaResearch Fellowmjjds@st-andrews.ac.uk
Dr Julie OswaldSenior Lecturerjno@st-andrews.ac.uk
Prof Graeme RuxtonProfessorgr41@st-andrews.ac.uk
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL2300: Learning Outcomes

Students completing module BL2300 successfully should be able to:

  • Use Mendeley to cite and reference sources
  • Describe the scientific method
  • Appreciate the differences between observational studies and experiments
  • Describe advantages and limitations of experiments
  • Design and carry out a simple experiment
  • Keep a record of an investigation
  • Be aware of Good Laboratory Practice
  • Write up experimental results in the form of a scientific report
  • Write a scientific essay
  • Manipulate equations
  • Perform laboratory calculations
  • Appreciate the use of simple mathematics in Biology
  • Handle biological datasets
  • Identify different data and variable types
  • Plot bar charts and scatter plots with error bars using R
  • Conduct simple non-parametric tests in R
  • Carry out simple General Linear Modelling using R
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

BL2300: Acquired Skills

The practical skills acquired will vary depending on the chosen mini project.


Practical Skills

  • Biomolecule isolation/characterisation
  • Buffers
  • Compound Microscopy
  • Handling invertebrate cells
  • Kinetic data analysis
  • Pipetting

Transferable Skills

  • Project report
  • Research proposal
  • Short essay (1000-2000 words)
  • Critically evaluating sources/information
  • Finding information on the web
  • Finding literature
  • Referencing
  • Searching databases
  • Sourcing figures/tables
  • Computer programming
  • Ethical considerations
  • Lab safety awareness
  • Problem-solving questions
  • Calculations/equations
  • Chi-square test
  • Concentrations
  • Data analysis
  • Data analysis (depending on project)
  • Data presentation
  • Decimal places
  • Descriptive statistics
  • Dilutions
  • Distinguish different types of data
  • Draw a line of best fit
  • Exponents
  • Generalised Linear Models
  • Linear regression
  • Logarithms
  • Powers of ten
  • Produce graphs/figures
  • Produce tables
  • SI units
  • Significant figures
  • Use Excel
  • Use R or R Studio
  • Volumes
  • Lab or field notebook
  • Designing experiments
  • Organising group work
  • Working in pairs/small groups
Data Sources: information in this online module handbook is gathered from several sources.
Small footnote marks beside content, or by section titles indicate the source.
* University of St Andrews Module Catalogue
School of Biology Symbiosis Database (module organisers only)
University of St Andrews MMS (St Andrews users only)

Policies

(Information in this section applies to all Biology Modules)

  • The procedures and regulations followed by the School of Biology are outlined in the University Handbook and in the School of Biology UG handbook  JH booklet info (st-andrews.ac.uk) 
  • All coursework associated with the module must be completed and submitted by its due date.
  • Specific School regulations relating to absence reporting, penalties and rules for late submission of work, extensions for coursework, return of coursework, S-coding, Good Academic Practice and Academic Alert are stated in the School of Biology UG hand book JH booklet info (st-andrews.ac.uk)  and students are required to carefully read these regulations.
  • Students are also referred to the University Handbook, available at: http://www.st-andrews.ac.uk/studenthandbook/